Diagnostic Pitfall in PCR-Based [alpha]-Thalassemia Genotyping Resulting from a (G[arrow right]C) Polymorphism at Nucleotide 71 3' to the [alpha]2-Globin Gene Termination Codon

From: Clinical Chemistry | Date: March 1, 2006| Author: Chui, David H K; Et al; Luo, Hong-Yuan; Wang, Wen; Chan, Amy Yuk-Yin | Copyright information

To the Editor:

α-Thalassemia is commonly diagnosed by PCR-based molecular methods, such as gap-PCR for deletional α-thalassemia (1) and minisequencing (SNaPshot(TM) system) for nondeletional α-globin gene mutations (2). However, "allele dropout" in the PCR amplification process can lead to erroneous results. We describe 3 individuals from 2 unrelated families in whom a hitherto unknown G[arrow right]C single-nucleotide polymorphism (SNP) in the α^sub 2^-globin gene ...

Related newspaper, magazine, and journal articles from HighBeam Research

Hemoglobin H Disease Classification by Isoelectric Focusing: Molecular Verification of 110 Cases from Thailand
Clinical Chemistry ; Hemoglobin (Hb) H disease is a mild to severe form of α-thalassemia caused by the absence/inactivation of three of four α-globin genes. As a result, there are insufficient α-globin chains to form HbA 945;^sub 2946;^sub 2 the excess β-globin chains forming unstable HbH 946;^sub
Diagnostic Pitfall in PCR-Based [alpha]-Thalassemia Genotyping Resulting from a (G[arrow right]C) Polymorphism at Nucleotide 71 3' to the [alpha]2-Globin Gene Termination Codon
Clinical Chemistry ; To the Editor: α-Thalassemia is commonly diagnosed by PCR-based molecular methods, such as gap-PCR for deletional α-thalassemia (1) and minisequencing (SNaPshot(TM) system) for nondeletional α-globin gene mutations (2). However, "allele dropout" in the PCR amplification process can
Multiple minisequencing screen for seven southeast Asian nondeletional [alpha]-thalassemia mutations
Clinical Chemistry ; [alpha]-Thalassemia is the most common globin disorder in the world, and the severe forms are especially prevalent among Southeast Asians. It is a disorder of absent or reduced production of [alpha]-globin chains resulting from mutations in the [alpha]-globin gene cluster on chromosome 16p13.3.
Microsatellite Markers within ^sup -SEA^ Breakpoints for Prenatal Diagnosis of HbBarts Hydrops Fetalis
Clinical Chemistry ; Background: We sought to develop a rapid prenatal diagnostic test for simultaneous detection of HbBarts hydrops fetalis and exclusion of maternal contamination. Methods: We developed a multiplex quantitative fluorescent PCR (QF-PCR) test that detects the presence/absence of 2 microsatellite markers
Characteristic [beta]-Globin Gene Cluster Haplotypes of Evenkis and Oroqens in North China
Human Biology ; Abstract Haplotype frequencies of the [beta]-globin gene cluster were estimated for 114 Evenkis and 81 Oroqens from northeast China, and their characteristics were compared with those in Japanese, Koreans, and three Colombian Amerindian groups of South America (Wayuu, Kamsa, and Inga tribes). A
Unusual Rearrangement of the [alpha]-Globin Gene Cluster Containing Both the -[alpha]^sup 3.7^ and [alpha][alpha][alpha]^sup anti-4.2^ Crossover Junctions: Clinical Diagnostic Implications and Possible Mechanisms
Clinical Chemistry ; Misalignment of the homologous regions of the α-globin gene cluster and unequal crossover during meiosis produce single α-globin gene deletions 945;) and reciprocal α-globin gene triplications 945;αα). Further unequal crossover of such recombinant alleles with wild-type
Rapid detection of [Beta]-globin gene mutations and polymorphisms by temporal temperature gradient gel electrophoresis
Clinical Chemistry ; ... abnormal electrophoretic behavior. This study shows that any existing DGGE protocol can be easily converted to TTGE. The melting maps obtained by DGGE for a fragment of the gene can be used directly to calculate the upper and lower temperatures for TTGE. We gratefully ...
Quantitative Assessment of Human [beta]-Globin Gene Expression In Vitro by TaqMan Real-Time Reverse Transcription-PCR: Comparison with Competitive Reverse Transcription-PCR and Application to Mutations or Deletions in Noncoding Regions
Clinical Chemistry ; β-Thalassemia is a genetic hemolytic disorder characterized by diminished production of β-globin chains, attributable to alterations within coding and noncoding sequences of the β-globin gene (1). Whether noncoding mutations are involved in the decrease of β-globin chain
A Multiplex Quantitative Fluorescent PCR Test for Prenatal Diagnosis of Hb Barts Hydrops Fetalis
Clinical Chemistry ; To the Editor: I read with interest the paper by Ho et al. (1), which described a rapid prenatal diagnostic test for simultaneous detection of Hb Barts hydrops fetalis and exclusion of maternal contamination. The main background to their study is that PCR-based techniques are highly sensitive and
[beta]-Globin Gene Cluster Haplotype Frequencies in Khalkhs and Buryats of Mongolia
Human Biology ; Abstract β-globin gene cluster haplotype frequencies of 169 Khalkhs and 145 Buryats were estimated, and their characteristics were compared with those of Evenkis. Oroqens, Koreans, Japanese, and three Colombian Amerindian groups. The present study suggests that Colombian Amerindians diverged