Allele Dropout in PCR-Based Diagnosis of Wilson Disease: Mechanisms and Solutions

From: Clinical Chemistry | Date: March 1, 2006| Author: Mak, Chloe M; Lam, Ching-Wan | Copyright information

Background: We investigated the mechanisms leading to allele dropout-the nonamplification of 1 of the alleles-in PCR-based diagnosis of Wilson disease (WD).

Methods: We extracted genomic DNA from blood samples from 6 WD patients (P1-P6) with allele dropouts detected in a previous study of WD in a Hong Kong Chinese population. We amplified the ATP7B gene by PCR and performed direct DNA sequencing of all exons of the ATP7B gene. To support the proposed mechanism of allele dropout, we use...

Related newspaper, magazine, and journal articles from HighBeam Research

Simple and Effective Strategies for Detection of Allele Dropout in PCR-Based Diagnosis of Wilson Disease
Clinical Chemistry ; To the Editor: Drs. Lam and Mak, in a recent article in this journal (1), described the mechanisms leading to allele dropout in the PCR-based diagnosis of Wilson disease (WD) and reported potential solutions to this problem. We propose 2 strategies that would enable unequivocal and rapid
Allele Dropout in PCR-Based Diagnosis of Wilson Disease: Mechanisms and Solutions
Clinical Chemistry ; Background: We investigated the mechanisms leading to allele dropout-the nonamplification of 1 of the alleles-in PCR-based diagnosis of Wilson disease (WD). Methods: We extracted genomic DNA from blood samples from 6 WD patients (P1-P6) with allele dropouts detected in a previous study of WD in a
Exon-Level Expression Profiling: A Comprehensive Transcriptome Analysis of Oral Fluids
Clinical Chemistry ; BACKGROUND: The application of global gene expression profiling to saliva samples is hampered by the presence of partially fragmented and degraded RNAs that are difficult to amplify and detect with the prevailing technologies. Moreover, the often limited volume of saliva samples is a challenge to
Fluorescence Single-Molecule Counting Assays for High-Sensitivity Detection of Cytokines and Chemokines
Clinical Chemistry ; Haoqun Qiu,1 Evan P. Ferrell,1 Niamh Nolan,2 Bruce H. Phelps,2 Raymond Tabibtazar,2 Duncan H. Whitney,1* and Eric A. Nalefski (1 U.S. Genomics, Woburn, MA;2 Aviir, Inc., Palo Alto, CA;* address correspondence to this author at: U.S. Genomics, 12 Gill St., Ste. 4700, Woburn, MA 01801; fax
Quantification of mRNA in Whole Blood by Assessing Recovery of RNA and Efficiency of cDNA Synthesis
Clinical Chemistry ; Background: Current gene expression analysis relies on the assumption that the isolated RNA represents all species of mRNA in proportions equal to those in the original materials. No system is available for absolute quantification of mRNA. Methods: We applied whole blood to 96-well filter-plates to
Identification of Twelve Polymorphisms in the Endothelin-1 Gene by Use of Fluorescently Labeled Oligonucleotides and PCR with Restriction Fragment Polymorphism Analysis
Clinical Chemistry ; Of the three endothelin peptides, endothelin-1, -2, and -3, endothelin-1 (EDN1) is the predominant isoform in the vascular system. EDN1 is a potent endogenous vasoconstrictor, has positive inotropic and chronotropic effects and mitogenic properties, influences homeostasis, and stimulates the
Tandem Mass Spectrometry for the Direct Assay of Enzymes in Dried Blood Spots: Application to Newborn Screening for Mucopolysaccharidosis II (Hunter Disease)
Clinical Chemistry ; Background: A treatment for mucopolysaccharidosis II (Hunter syndrome) has recently become available. Therefore, we developed a high-throughput assay method appropriate for newborn screening for the relevant enzyme, iduronate 2-sulfatase. Methods: We synthesized a new iduronate 2-sulfatase
Real-time PCR Assay for Ultrasensitive Quantification of DNA-Binding Proteins
Clinical Chemistry ; Background: The specific binding of proteins to DNA is a key step for many cellular activities, such as transcription regulation, DNA replication, recombination, repair, and restriction. The detection of DNA-binding proteins, as well as the identification of specific binding sites, is therefore
Altered Distribution of Transferrin Isoforms According to Serum Storage Conditions
Clinical Chemistry ; Measurements of carbohydrate-deficient transferrin (CDT) are used to detect alcohol abuse (1-6). Various patient factors (7-11) and comigration of analytes with transferrin (Tf) isoforms (12, 13) can affect the results of the measurements. Recent studies have questioned the influence of serum and
A Simple Assay to Measure Phagocytosis of Live Bacteria
Clinical Chemistry ; BACKGROUND: The phagocytosis of pathogens is essential for fighting infections. No assay is available, however, to measure both engulfment and degradation of bacteria under conditions similar to those in vivo. We sought to develop a flow cytometric assay to measure the engulfment and degradation of